PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000303211
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 284aa    MW: 32254 Da    PI: 9.7452
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000303211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.43.1e-1120725482128
            NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +W    +d++ +++  ++     ktLv+ykgrap+ge+tdWvmhey+l
  MDP0000303211 207 VWTRWPEDNHFYEAvITNFNRAEKTLVYYKGRAPSGERTDWVMHEYTL 254
                    566666666666643334467789**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1586397.85E-3544154IPR005491ENT domain
SMARTSM011912.0E-3550123IPR005491ENT domain
PROSITE profilePS5113822.39250137IPR005491ENT domain
PfamPF037351.9E-2852120IPR005491ENT domain
PROSITE profilePS510059.82137277IPR003441NAC domain
Gene3DG3DSA:2.30.30.1401.9E-5201236No hitNo description
SuperFamilySSF637486.88E-7201236No hitNo description
CDDcd045080.00587204235No hitNo description
SuperFamilySSF1019413.66E-13229277IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDYELSDSSG TDDDFXPSHQ NRFQRGGRTS GNGRSAAVSS APLPRMHGDM ETQIHRIEQE  60
AYCSLLRAFS AQSDAITWDK ETLMTNLRKE LRVSDEEHRE LLSRVXADDM IQRIRQWRKS  120
GLQPGTLNAA QPVHDPLPSP TVSASRKKQK TSQSLSLGAP TPXLPXSMQP SSSALRRGPP  180
PGPRNKKPKS SEPAGGETSD PLVGRKVWTR WPEDNHFYEA VITNFNRAEK TLVYYKGRAP  240
SGERTDWVMH EYTLDEEELK RCQNVQQYHA IYKVYKKQTR LSNK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.84851e-119bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349200.11e-156PREDICTED: uncharacterized protein LOC103940751
SwissprotF4K2F03e-91EML3_ARATH; Protein EMSY-LIKE 3
TrEMBLM5WNP91e-128M5WNP9_PRUPE; Uncharacterized protein (Fragment)
STRINGPOPTR_0001s05150.11e-109(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.18e-22NAC domain containing protein 16